PANP - a New Method of Gene Detection on Oligonucleotide Expression Arrays

PANP is a method which offers an improved presence/absence detection call for gene expression profiling of HG-U133 and HG-U133Plus2 Affymetrix chips.

This method has been accepted into the Bioconductor project, and is expected to be included with the release of Bioconductor 1.8.

The panp package is available at "panp" on the contribution/development package website at Bioconductor.

Paper on PANP is available as a [Preprint PDF], accepted to BIBE07 (2007).

Supplemental Information for PANP paper

PANP supplemental info (MS Word)

PANP vs. Half-price analysis by Wu and Irizarry (MS Word)

Contact: peter.warren ( at sign ) (Peter Warren)
Last updated by Deanne Taylor, November 11, 2005