Publications submitted after January 2012
1. Ruiz-Herrero, T., Velasco, E., Hagan, M.F., “Mechanisms of budding of nanoscale particles through lipid bilayers” submitted arXiv:1202.4691
Publications listed in research description
A. Publications currently under review
PDFs are provided for all publications except 4,5,6, which are not yet publicly available and I am not sole corresponding author
1. Yu, N., Hagan, M.F., “Water behavior during the association of HIV capsid proteins” submitted PDF
2. Giomi L., Mahadevan L., Chakraborty, B., and Hagan, M.F. “Banding, excitability and chaos in active nematic suspensions”, Nonlinearity, revision under review, arXiv:1110.4338 (2011) PDF
3. Gopinath, A., Hagan, M.F., Marchetti, M.C., Baskaran, A. “Dynamical Self-regulation in Self-propelled Particle Flows” Phys. Rev. E, revision under review PDF
4. Dhason, M.S, Wang, J. C., Hagan, M.F., Zlotnick, A. “Differential assembly of Hepatitis B Virus core protein on single- and double-stranded nucleic acid suggests the dsDNA-filled core is springloaded”, Virology, revision under review
6. D.C. Abanulo1, C. A. Badalucco, J.A. Gascon, A. Dobrynin, Y. Yang, M.F. Hagan, and F. Papadimitrakopoulos. “Carbon Nanotube Superhelical Twisting via Flavin Quasi-Epitaxial Assembly”, (submitted to Nature Materials)
B. Publications which are published or accepted
5. Ni, P., Wang, Z., Ma, X. Das, N.C., Sokol, P., Chiu, W., Dragnea, B.,Hagan, M.F.*, Kao, C.C., “An Examination of the Electrostatic Interactions between the N-Terminal Tail of the Coat Protein and RNA in Brome Mosaic Virus”, J. Mol. Biol., in press
* co-corresponding author
7. Patel, A.J; Varilly, P.; Jamadagni, S.N.; Hagan, M.F.; Chandler, D.; and Garde, S. “Sitting at the edge: How biomolecules use hydrophobicity to tune their interactions and function”, J. Phys. Chem. B (in press, DOI: 10.1021/jp2107523), arXiv:1109.4431 PDF
8. T. Gibaud, E. Barry, M. Zakhary, A. Ward, C. Berciu, Y. Yang, M.F. Hagan, R. Oldenbourg, D. Nicastro, R. Meyer, Z. Dogic. “Reconfigurable self-assembly through chiral control of interfacial tension”, Nature, (to appear Jan 4, 2012) PDF
9. McCandlish, S.R, Baskaran, A., and Hagan, M.F.. “Spontaneous Segregation of Self-Propelled Particles with Different Motilities”, Soft Matter, 8, 2527 (2012) PDF PDF for supplemental information
10. Yang Y., Barry E., Dogic Z. and Hagan, M.F. “Self-assembly of 2D membranes from mixtures of hard rods and depleting polymers”, Soft Matter, 8, 707 (2012), arXiv:1103.2760 PDF
11. Yang Y. and Hagan, M.F. “Theoretical calculation of the phase behavior of colloidal membranes” Phys. Rev. E, 84, 051402 (2011) PDF
12. Hagan, M.F., Elrad O.M., and Jack R.L. “Mechanisms of kinetic trapping in self-assembly and phase transformation”, J. Chem. Phys, 135, 104115 (2011) PDF
13. Giomi L., Mahadevan L., Chakraborty, B., and Hagan, M.F. “Excitable Patterns in Active Nematics”, Phys. Rev. Lett 106, 218101 (2011) PDF
14. Sumedha; Hagan, M.F.; Chakraborty, B. “Prolonging assembly through dissociation: A self-assembly paradigm in microtubules”, Phys. Rev. E, 83, 051904 (2011) PDF
15. [invited] Elrad O.M.; Hagan, M.F. “Encapsulation of a Polymer by an Icosahedral Virus”, Phys. Biol., 7, 045003 (2010), Part of a special focus issue on physical virology. PDF
16. Yang, Y.; Meyer, R.B.; Hagan, M.F. “Self-limited self-assembly of chiral filaments”, Phys. Rev. Lett., 104, 258102 (2010) PDF
17. Kivenson, A.; Hagan, M.F. “Mechanisms of Capsid Assembly around a Polymer”, Biophys. J, 99, 619-628 (2010) PDF PDF for supplemental information
18. Hagan, M.F. and Elrad O.M. “Understanding the Concentration Dependence of Viral Capsid Assembly Kinetics - the Origin of the Lag Time and Identifying the Critical Nucleus Size”, Biophys. J, 98, 1065-1074 (2010) PDF PDF for supplemental information
19. Hagan, M.F. “A theory for viral capsid assembly around electrostatic cores”, J. Chem. Phys., 130, 114902 (2009) PDF
20. Huang, F.; Addas, K.; Ward, A ; Flynn, N.T.; Hagan, M.F.; Dogic, Z.; Fraden, S. “The pair potential of colloidal stars”, Phys. Rev. Lett., 102, 108302 (2009) PDF
21. Whitelam, S.; Feng, E.H.; Hagan, M.F.; Geissler, P.L. “The role of collective motion in examples of coarsening and self-assembly”, Soft Matter, 6, 1251-1262 (2009) (Special issue on Self-Assembly) PDF
22. Elrad, O.M.; Hagan, M.F. “Mechanisms of size control and polymorphism in viral capsid assembly”, Nano Letters, 8, 3850-3857 (2008) PDF PDF for supplemental information
23. Hagan, M. F. “Controlling viral capsid assembly with templating”, Phys. Rev. E, 77, 051904 (2008) PDF
C. Publications from before I was an independent scientist
24. Jack, R. L.; Hagan, M. F.; Chandler, D. “Fluctuation-dissipation ratios in the dynamics of self-assembly”, Phys. Rev. E, 76, 021119 (2007) PDF
25. Hagan, M. F.; Chandler, D. “Dynamic Pathways for Viral Capsid Assembly”, Biophys. J., 91,42 (2006) PDF
26. Hagan, M. F.; Chakraborty, A. K. “Hybridization Dynamics of Surface Immobilized DNA”, J. Chem. Phys., 120, 4958 (2004) PDF
27. Hagan, M. F.; Dinner, A. R.; Chandler, D.; Chakraborty, A. K. “Atomistic Understanding of Kinetic Pathways for Single Base-Pair Binding and Unbinding in DNA”, Proc. Natl. Acad. Sci. USA, 100, 13922 (2003) PDF
28. Hagan, M. F.; Majumdar, A.; Chakraborty, A. K. “Nanomechanical Forces Generated by Surface Grafted DNA”, J. Phys. Chem. B, 106, 10163 (2002) PDF
29. Wu, G.; Haifeng, J.; Hansen, K.; Thundat, T.; Datar, R.; Cote, R.; Hagan, M. F.; Chakraborty, A. K.; Majumdar, A. “Origin of Nanomechanical Cantilever Motion Generated from Biomolecular Interactions”, Proc. Natl. Acad. Sci. USA, 98, 1560 (2001). PDF